Will a judge take my wishes into consideration even though I'm 16 years old?

You face some very restricted issues, among them being a United States Supreme Court ruling about parents having constitutional rights to raise their children unless the parents (note the plural) are unfit. You may not be eligible for a guardianship. Courts will usually interested in what kids have to say but take into account that they are not adults. Good luck with your situation.

In California with the new Elkins Law, the Court MUST take the minor's preferences into consideration. Most states have similar laws. This does not mean that the Court will follow your preferences. The Court will still make an order based upon what the court thinks is in your best interest. I would find legal counsel to help plead your case.